PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_06940
Common NameKK1_007136
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family Trihelix
Protein Properties Length: 515aa    MW: 59742.6 Da    PI: 6.4211
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_06940genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.8e-1897177286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                    Wt++evlaL+++r++me+++ +       We+vs+k++e g+++s+++Ckek+e+ ++++ +i+ g++++ t ++ ++++++++le
  C.cajan_06940  97 WTNDEVLALLRIRSSMESWFPEL-----TWEHVSRKLAELGYKKSAEKCKEKFEEESRYFNNINFGKNNNtTTTTNNNYRFLSELE 177
                    ********************987.....9***********************************9999995677888999999997 PP

2trihelix97.41.2e-30355440185
       trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rW+k+evlaLi++r++  ++ +++k   k plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql
  C.cajan_06940 355 RWPKDEVLALINLRSSSVTNNNEEKegNKVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQL 440
                    8*************977766665433399*******************************************8.9999********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172193150IPR001005SANT/Myb domain
PfamPF138375.1E-1295164No hitNo description
PROSITE profilePS500906.14496148IPR017877Myb-like domain
PROSITE profilePS500906.748348414IPR017877Myb-like domain
SMARTSM007170.0089352416IPR001005SANT/Myb domain
CDDcd122033.41E-24354421No hitNo description
PfamPF138372.2E-20354440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MFDGVPDQFH QFITPRTSLP LHLPFPLHAS AAPNTTFPTN FDPYNPSHNL PLQPNLLHPL  60
HHKDHEEKEE TSTVPMNFEI QRDQRQQQQL PELVDPWTND EVLALLRIRS SMESWFPELT  120
WEHVSRKLAE LGYKKSAEKC KEKFEEESRY FNNINFGKNN NTTTTTNNNY RFLSELEQLY  180
QGGGGDHQAV TEEKTQQQDK MGQHASEEGD SRNVVAKQND DAVKKTKERK RKRPDRFEIF  240
KGFCESIVHK MMAQQEEMHN KLLEDMMKRD EEKFTREEAW KKQEMEKMNK ELDMMAREQA  300
IAGDRQANII QILNKFSATS PASQTLKVTS SLHNNPLETN SIMNKGNEKD DTGRRWPKDE  360
VLALINLRSS SVTNNNEEKE GNKVPLWERI SQGMSELGYK RSAKRCKEKW ENINKYFRKT  420
KDVNKKRSLD SRTCPYFHQL SCLYNQGKLV LQSESQLNDN PPENPDEQVP QDQTQANESS  480
SPQVGSGGFS VQQQQVDHGG EKPLMQVPSL DFDQF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217541e-149EF221754.1 Glycine max trihelix transcription factor (GT-2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556463.20.0PREDICTED: trihelix transcription factor GTL2-like
SwissprotQ8H1815e-97GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A151U5740.0A0A151U574_CAJCA; Uncharacterized protein
STRINGGLYMA20G36680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-96Trihelix family protein